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Faculty of Science School of Computational Science and Engineering
Faculty of Science

School of Computational Science and Engineering

Student Publications

[Students' names are underlined]

  • Dhindsa, Kiret, Dean Carcone, and Suzanna Becker. "Toward an Open-Ended BCI: A User-Centered Coadaptive Design." Neural Computation (2017).
  • Dhindsa, Kiret. "Filter-Bank Artifact Rejection: High performance real-time single-channel artifact detection for EEG." Biomedical Signal Processing and Control 38 (2017): 224-235.
  • Dhindsa, Kiret, Dean Carcone, and Suzanna Becker. "A Brain-Computer Interface Based on Abstract Visual and Auditory Imagery: Evidence for an Effect of Artistic Training." International Conference on Augmented Cognition. Springer, Cham, 2017.
  • Dhindsa, Kiret, and Suzanna Becker. "Emotional reaction recognition from EEG." Pattern Recognition in Neuroimaging (PRNI), 2017 International Workshop on. IEEE, 2017.
  • Langlois C, Abadi A, Peralta-Romero Jesus, Alyass A, Suarez F, Gomez-Zamudio J, Burguete-Garcia A, Yazdi F, Cruz M, Meyre D, Evaluating the transferability of 15 European-derived fasting plasma glucose SNPs in Mexican children and adolescents, Scientific Reports 6, 36202, 2016.
  • Hasan R, Srivastava G, Alyass A, Sharma R, Saraya A, Chattopadhyay TK, DattaGupta S, Walfish PG, Chauhan SS, Ralhan R: Prediction of recurrence free survival for esophageal cancer patients using a protein signature based risk model. Oncotarget 2016.
  • H. Bai, F. Franek, and W.F. Smyth, The New Periodicity Lemma Revisited, Discrete Appliead Mathematics 212, 30-36 (2016).
  • Champredon D, Cameron C, Smieja M, Dushoff J, Epidemiological impact of a vaccine against syphilis: a simulation study. Epidemiology and Infection (2016) Aug 1:1-9.
  • Xue K., Kurella V., and Spence A.. "Multi-sensor blue LED and touch probe inspection system." Computer-Aided Design and Applications (2016): 1-8.
  • Franek F., Sohidull Islam A. S. M., Sohel Rahman M. & Smyth W. F., Algorithms to compute the Lyndon array, Proc. Prague Stringology Conference, to appear (2016).
  • Ihsani A, Farncombe TH. An Adaptation of the Distance Driven Projection Method for Single Pinhole Collimators in SPECT Imaging. IEEE Transaction on Nuclear Science 63(1), 2016.
  • Ihsani A, Farncombe TH. A Kernel Density Estimator-based Maximum A Posteriori Image Reconstruction Method for Dynamic Emission Tomography Imaging. IEEE Transactions on Image Processing 25(5), 2016.
  • Sohani ZN, Sarma S, Alyass A, de Souza RJ, Robiou-du-Pont S, Li A, Mayhew AJ, Yazdi F, Reddon H, Lamri A, Stryjecki C, Ishola A, Lee YK, Vashi N, Anand SS, Meyre D. Empirical evaluation of the Q-Genie tool: a protocol for assessment of effectiveness, BMJ Open 6, e010403, 2016.
  • Stryjecki C, Peralta-Romero J, Alyass A, Karam-Araujo R, Suarez F, Gomez-Zamudio J, Burguete-Garcia A, Cruz M, Meyre D. Association between PPAR-γ2 Pro12Ala genotype and insulin resistance is modified by circulating lipids in Mexican children, Scientific Reports 6, 24472, 2016.
  • Melkoumian S. and Protas B.,"Drift Due to Two Obstacles in Different Arrangements",
    Theoretical and Computational Fluid Dynamics (available on-line at doi: 10.1007/s00162-016-0394-9), 2016.
  • Aechtner, M. Kevlahan, N.K-R. & Dubos, T., A conservative adaptive wavelet method for the shallow-water equations on the sphere. Q. J. R. Meteorol. Soc. 141(690), 1712-1726, (2015).
  • Kevlahan, N.K.-R., Dubos, T. Aechtner, M. Adaptive wavelet simulation of global ocean dynamics using a new Brinkman volume penalization. Geosci. Model Dev. 8 3891-3909, (2015).
  • Champredon D, Dushoff J. Intrinsic and realized generation intervals in infectious-disease transmission. Proceedings of the Royal Society B: Biological Sciences 282:20152026, 2015.
  • Champredon D, Bellan SE, Delva W, et al. The effect of sexually transmitted co-infections on HIV viral load amongst individuals on antiretroviral therapy: a systematic review and meta-analysis. BMC infectious diseases 15: 1–11, 2015.
  • Bellan SE, Pulliam J, Pearson C, Champredon D et al. Statistical power and validity of Ebola vaccine trials in Sierra Leone: a simulation study of trial design and analysis. The Lancet infectious diseases 15: 703–10, 2015.
  • Sethurajan A. K., Krachkovskiy S., Halalay I. C., Goward G. R. and Protas B., "Accurate Characterization of Ion Transport Properties in Binary Symmetric Electrolytes Using In-Situ NMR Imaging and Inverse Modeling", The Journal of Physical Chemistry - B 119, 12238-12248, 2015.
  • Dey, A.K., Alyass, A., Muir, R., Black, S.E., Swartz, R.H., Murray, B.J., & Boulos, M.I., Validity of self-report of cardiovascular risk factors in a population at high risk for stroke. Journal of Stroke and Cerebrovascular Diseases, 24, 2860-5 2015.
  • Adalsteinsson, G. and Kevlahan, N.K.-R. Compressive sampling for energy spectrum estimation of turbulent flows. SIAM J. Sci. Comput. 37, B452-B472, 2015.
  • Ralhan R, Veyhl J, Chaker S, Assi J, Alyass A, Jeganathan A, Somasundaram RT, MacMillan C, Freeman JL, Vescan AD, Witterick I, Walfish PG Md, Immunohistochemical Subcellular Localization of Protein Biomarkers Distinguishes Benign from Malignant Thyroid Nodules: Potential for Fine Needle Aspiration Biopsy Clinical Application. Thyroid, (in press) 2015
  • Alyass, A., M. Turcotte, and D. Meyre, From big data analysis to personalized medicine for all: challenges and opportunities. BMC Med Genomics8(1): 33, 2015.
  • Chauhan SS, Kaur J, Kumar M, Matta A, Srivastava G, Alyass A, Assi J, Leong I, MacMillan C, Witterick I, Colgan TJ, Shukla NK, Thakar A, Sharma MC, Siu KW, Walfish PG, Ralhan R., "Prediction of recurrence-free survival using a protein expression-based risk classifier for head and neck cancer", Oncogenesis 4:e147, 2015.
  • J. Gustafsson and B. Protas,"Computation of Steady Incompressible Flows in Unbounded Domains", Computers and Fluids 112, 94-107, 2015.
  • A. Deza, K. Huang, and M. Metel, “Chance constrained optimization for targeted Internet advertising”, Omega - International Journal of Management Science (to appear), 2015.
  • Kumar M, Srivastava G, Kaur J, Assi J, Alyass A, Leong I et al. “Prognostic significance of cytoplasmic S100A2 overexpression in oral cancer patients”, Journal of Translational Medicine  13(1):8, 2015.
  • Alyass A, Almgren P, Akerlund M, Dushoff J, Isomaa B, Nilsson P et al. “Modelling of OGTT curve identifies 1 h plasma glucose level as a strong predictor of incident type 2 diabetes: results from two prospective cohorts”, Diabetologia 58(1):87-97, 2015.
  • H. Bai, F. Franek, and W.F. Smyth, Two Squares Canonical Factorization, Proceedings of Prague Stringology Conference PSC 2014, Prague, Czech Republic, September, 2014, 52-58.
  • A. Amiri and S. Haykin, “Improved sparse coding under the influence of perceptual attention”, Neural Computation 26(2):337-420, 2014.
  • S. Haykin, A. Amiri, K. Hall, and Y. Xue, “Solutions Manual for Digital Communication Systems”, Wiley, 2014.
  • J. D. Pryce, N. S. Nedialkov and G. Tan, "DAESA — a Matlab Tool for Structural Analysis of Differential-Algebraic Equations: Theory", To appear in ACM TOMS , 2014.
  • N. S. Nedialkov, J. D. Pryce, and G. Tan, "DAESA — a Matlab Tool for Structural Analysis of Differential-Algebraic Equations: Software", To appear in ACM TOMS, 2014.
  • A. Gully, H. Liu, S. Srinivasan, A. K. Sethurajan, S. Schougaard, and B. Protas, "Effective Transport Properties of Porous Electrochemical Materials - A Homogenization Approach", Journal of The Electrochemical Society 161 (focus issue "Mathematical Modeling Of Electrochemical Systems At Multiple Scales"), E3066-E3077, 2014.
  • S. Melkoumian and B. Protas, "Wake Effects on Drift in Two-Dimensional Inviscid Incompressible Flows", Physics of Fluids 26, 123601, 2014.
  • Dhindsa, K., Drobinin, V., King, J., Hall, G., Burgess, N. and Becker, S., “Examining the role of the temporo-parietal network in memory, imagery and viewpoint transformations”, Frontiers in Human Neuroscience 8, No 709, 2014.
  • Engchuan, W., Dhindsa, K., Lionel, A. C., Schere, S. W., Chan, J., Merico, D. “Performance of case-control rare copy number variation annotation in classification of autism”, BMC Medical Genomics 7, 2014.
  • M. Fatemi and S. Haykin, "Cognitive Control: Theory and Application" IEEE Access 2, 698–710, 2014.
  • O. Peshko, T. N. Davidson, J. Modersitzki, T. Terlaky, and D. J. Moseley, “A novel marker enhancement lter (MEF) for uoroscopic images”, Journal of Physics: Conference Series 489, 012038 (Proceedings of the 17th International Conference on the Use of Computers in Radiation Therapy), 2014.
  • Sarafraz, P., Abdelsalam M., Lightstone, M.F., Cotton, J.S., “Thermal optimization of flat plate PCM capsules in  natural convection solar water heating systems”, Proceedings of the 21st Annual Conference of the CFD Society of Canada (CFD2013), Sherbrooke, May 6-9, 2013.
  • M. R. Grasselli and O. Ismail, “An agent-based computational model for bank formation and interbank networks, in Handbook on Systemic Risk”, J.-P. Fouque and J. Langsam (eds), 401-430, Cambridge University Press, 2013.
  • S. Kulkarni-Thaker and V. Mahalec “Multiple Optima in Gasoline Blend Planning”, Industrial & Engineering Chemistry Research 52(31):10707-10719, 2013.
  • V. Bukshtynov and B. Protas, "Optimal Reconstruction of Material Properties in Complex Multiphysics Phenomena", Journal of Computational Physics 242, 889-914, 2013.
  • J. Gustafsson and B. Protas, "On Oseen Flows for Large Reynolds Numbers", Theoretical and Computational Fluid Dynamics 27, 665-680, 2013.
  • Champredon D, Bellan S, Dushoff J, “HIV Sexual Transmission Is Predominantly Driven by Single Individuals Rather than Discordant Couples”, A Model-Based Approach. PLoS ONE 8(12): e82906, 2013.
  • Taghavi, E. and Tharmarasa, R. and Kirubarajan, T. and Y. Bar-Shalom, “Bias Estimation for Practical Distributed Multiradar-Multitarget Tracking Systems”, In Proceedings of FUSION. 2013, pp. 1304--1311, Istanbul, Turkey, July 2013.
  • I. Park and  D. W. Capson, “Improved motion estimation time using a combination of dynamic reference frame selection and residue-based mode decision”, Signal, Image and Video Processing6(1): 25-39, 2012.
  • G. Karakostas, S. G. Kolliopoulos, and J. Wang. "An FPTAS for the minimum total weighted tardiness problem with a fixed number of distinct due dates", ACM Transactions on Algorithms 8(4), 17 pages, 2012.
  • S. Haykin, M. Fatemi, P. Setoodeh, Y. Xue, "Cognitive Control", Proceedings of the IEEE  100 (12), 3156–3169, 2012.
  • Ihsani, A. ; Farncombe, T.H., “A mathematical formulation of the single-pinhole transform and asymptotic properties in Fourier space”, Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2012 IEEE Page(s): 2493-2496, 2012.
  • P. He and L. Zhao. “Correction of convergence proof for iterative water-filling in Gaussian MIMO broadcast channels”, IEEE Transactions on Information Theory 57(4):2539–2543, 2011.
  • A. D. Bain, Ch. Anand, Z. Nie, “Exact Solution of the CPMG Pulse Sequence with Phase Variation Down the Echo Train: Application to R2 Measurements”, Journal of Magnetic Resonance 209, 183-194, 2011.
  • Farazmand, M.M., Kevlahan, N.K.-R. & Protas, B., “Controlling the dual cascade of two-dimensional turbulence”, J. Fluid Mech.668, 202-222, 2011.
  • V. Bukshtynov, O. Volkov, and B. Protas, "On Optimal Reconstruction of Constitutive Relations", Physica D 240, 1228-1244, 2011.
  • M. R. Oskoorouchi, H. R. Ghaffari, T. Terlaky, and D. M. Aleman, "An interior point constraint generation algorithm for semi-infinite optimization with health-care application", Operations Research 59(5), 1184-1197, 2011.
  • A. D. Bain, D. Hughes, Ch. Anand, Z. Nie and V. Robertson, “Problems, Artifacts and Solutions in the INADEQUATE NMR Experiment”, Magnetic Resonance in Chemistry 48, 630-641, 2010.
  • A. Bain, Ch. Anand, Z. Nie, “Exact Solution to the Bloch Equations and Application to the Hahn Echo”, Journal of Magnetic Resonance 206, 227-240, 2010.
  • J. Gustafsson and B. Protas, "Regularization of the Backward-in-Time Kuramoto-Sivashinsky Equation", Journal of Computational and Applied Mathematics 234, 398-406, 2010.
  • Y. Li and T. Terlaky, "A New Class of Large Neighborhood Path-Following Interior Point Algorithms for Semidefinite Optimization with O(n$\backslash$logTr(X\^0S\^0)ϵ) Iteration Complexity", SIAM Journal on Optimization 20(6), 2853-2875, 2010.
  • W. L. Hare, M. J. J. Liu, T. Terlaky, “Efficient preprocessing for VLSI optimization problems”, Computational Optimization and Applications 45, 475-493, 2010.
  • F. Ahmed and T. N. Davidson, “Optimal power allocation for orthoganal relay systems with quality-of-service contraints”,  In Conference Record of the 43rd Asilomar Conference on Signals, Systems and Computers, pages 1058-1065, Pacific Grove, CA, November 2009.
  • P. Setoodeh and S. Haykin, “Robust transmit power control for cognitive radio”, Proceedings of the IEEE - Special Issue on Cognitive Radio  97(5), 915-939, 2009.
  • G. Karakostas, S. G. Kolliopoulos, and J. Wang. "An FPTAS for the minimum total weighted tardiness problem with a fixed number of distinct due dates", Proceedings of 15th Annual International Computing and Combinatorics Conference (COCOON),  Springer LNCS 5609, 238-248, 2009.   
  • T. Terlaky and J. Zhu, "Comments on Dual methods for nonconvex spectrum optimization of multicarrier systems," Optimization Letters2, 497-503, 2008.
  • Ch. Anand, A. Bain, Z. Nie, Simulation of Steady-State NMR of Coupled Systems Using Liouville Space and Computer Algebra Methods, Journal of Magnetic Resonance 189, 200-208, 2007.
  • I. Park, S. Shirani, D. W. Capson: “Mesh Simplification Using an Area-Based Distortion Measure”, J. Math. Model. Algorithms 5(3): 309-329, 2006.
McMaster University - Faculty of Science

Mailing Address

Department of Mathematics & Statistics
School of Computational Science and Engineering

Hamilton Hall, Room 218
1280 Main Street West
Hamilton, Ontario, Canada
L8S 4K1

Contact Information

Office Hours:
8:30 a.m. - 12:00 p.m.
1:00 p.m. - 4:30 p.m.
Telephone Inquiries:
+1 (905) 525-9140 ext.24116
Graduate Email Inquiries:
graduate@math.mcmaster.ca

McMaster University - Faculty of Science

Mailing Address

Department of Mathematics & Statistics
School of Computational Science and Engineering

Hamilton Hall, Room 218
1280 Main Street West
Hamilton, Ontario, Canada
L8S 4K1

Contact Information

Office Hours:
8:30 a.m. - 12:00 p.m.
1:00 p.m. - 4:30 p.m.
Telephone Inquiries:
+1 (905) 525-9140 ext.24116
Graduate Email Inquiries:
graduate@math.mcmaster.ca